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Apr 23, 2018
Category: General
Posted by: admin

The Department of Microbiology is in the process of revising the syllabus of M.Sc. Microbiology program under Choice Based Credit System. The draft of the revised syllabus has been prepared after taking into consideration the feedback obtained from multiple stakeholders including the present students, the alumni, as well as prospective employers from the corporate sector. The Department invites your views and suggestions on the same which may be submitted only by email at microsdc@south.du.ac.in latest by 5 PM on Friday, the 4th of May 2018. The draft of syllabus may be downloaded here.

Apr 17, 2018
Category: General
Posted by: admin

On 20-April-2018, Ms.Nivedita Gaur will present her pre-PhD submission seminar entitled -“The role of human tumor associated herpesvirus latent antigens in epithelial to mesenchymal transition of cancer cells" at 11AM in Seminar room of the Department. 

Apr 13, 2018
Category: General
Posted by: admin

On 13-Apr-2018, Ms.Ashima Dua will be presenting a paper which may be downloaded by clicking on the image below. This will be followed by work presentation by Mr.Gaurav Kumar.

Paper Cover

CMS - 2.2.7 - Skookumchuck
 

Prof. Swati Saha

Dr.Swati Saha

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email: ss5gp@yahoo.co.inSwatiPic
phone: 011-24157380

Area of research: DNA replication and chromatin modifications

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Research description:

Our laboratory researches two aspects of DNA biology: DNA replication and chromatin modifications. The two model systems being investigated are the protozoan parasite Leishmania donovani (causative agent of kala azar) and the euryarchaeon Picrophilus torridus.

Eukaryotic DNA replication is a largely conserved process where the synthesis of DNA in the S phase of the cell cycle is preceded by the licensing of origins in the G1 phase. The process of licensing of origins begins with the assembly of pre-replication complexes (pre-RCs) at or very near origins in the G1 phase.  Multiple proteins form the pre-RCs, starting with the association of the Origin Recognition Complex (ORC, comprising Orcs1-6) with origin DNA, followed by the sequential recruitment of Cdc6, Cdt1, and the MCM complex (comprising Mcm2-7), among other proteins. The association of the MCM complex licenses origins to fire, and as cells enter S phase, specific components of the complex are phosphorylated and additional proteins like Cdc45 and GINS are recruited to form the pre-initiation complex, thus allowing replication to ensue upon the association of the replicative polymerases.  Based on genome sequence annotation it appears that the process in Leishmania is broadly conserved with other eukaryotes, with orthologs of several of the pre-RC and pre-IC being identified. However, several of the conserved orthologs are absent, reflecting the early divergence of Leishmania from the eukaryotic lineage.  Thus, while Orc1 and Orc4 have been identified, Orcs 2,3 5 and 6 are missing.  No Cdt1 has been identified either. Our laboratory has charactered three proteins: Orc1, Mcm4, and PCNA, and is currently characterizing Cdc45.

The second aspect our lab has been investigating is histone modifications. In general, eukaryotic histones are highly conserved in sequence and the post-translational modifications (PTMs) they carry. These include specific acetylation, methylation, phosphorylation, and ubiquitination events to name a few. These modifications regulate a myriad of cellular processes such as transcription, replication and DNA repair. However, trypanosomatid histones are divergent in sequence from histones of other eukaryotes, and consequently, the modifications they carry are also divergent.  While no information is available regarding the global landscape of histone modifications in Leishmania species, work from the closely related Trypanosoma species have identified several modification marks.  Our lab has examined histone acetylation events in Leishmania donovani. Using biochemical assays we have identified three histone H4 acetylation marks in vitro, and using the approach of creating genomic knockouts we have validating two of these in vivo as well.  By characterizing the phenotypes of the knockout lines we determined that while histone acetyltransferase HAT3 acetyated histone H4 at the K4 position, and played a role in modulating the cell’s response to UV-induced DNA damage, histone acetyltransferase HAT2 acetyated histone H4 at the K10 position and modulated gene expression, most likely through the acetylation of promoter regions. Histone acetyltransferase HAT4 was found to modulate events at the G2/M phase of the cell cycle. We are currently beginning investigations into histone methylation events.

 

Select Publications:

Chandra, U, Yadav, A, Kumar, D, and Saha, S. (2017).  Cell cycle stage-specific transcriptional activation of cyclins mediated by HAT2-dependent H4K10 acetylation of promoters in Leishmania donovani. PLoS Pathogens 13(9): e1006615

Yadav, A, Chandra, U, and Saha, S. (2016).  Histone acetyltransferase HAT4 modulates navigation across G2/M and re-entry into G1 in Leishmania donovani. Scientific Reports 6: 27510

Kumar, D, and Saha, S. (2015). HAT3-mediated acetylation of PCNA precedes PCNA monoubiquitination following exposure to UV radiation in Leishmania donovani. Nucleic Acids Res. 43(11):5423-41

Goswami, K, Arora, J, and Saha, S. (2014). Characterization of the MCM homohexamer from the thermoacidophilic euryarchaeon Picrophilus torridus. Scientific Reports  5: 9057.

Arora, J, Goswami, K, and Saha, S. (2014). Characterization of the replication initiator Orc1/Cdc6 from the archaeon Picrophilus torridus. J Bacteriol. 196: 276-286. 

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